Chai-1
Chai-1 is a multi-modal foundation model for molecular structure prediction that performs at the state-of-the-art across a variety of benchmarks. Chai-1 enables unified prediction of proteins, small molecules, DNA, RNA, glycosylations, and more.
For more information on the model's performance and capabilities, see our technical report.
Installation
pip install chai_lab
This Python package requires Linux, and a GPU with CUDA.
Running the model
The model accepts inputs in the FASTA file format, and allows you to specify the number of trunk recycles and diffusion timesteps via the chai_lab.chai1.run_inference function. By default, the model generates five sample predictions, and uses embeddings without MSAs or templates.
The following script demonstrates how to provide inputs to the model, and obtain a list of PDB files for downstream analysis:
python examples/predict_structure.py
For more advanced use cases, we also expose the chai_lab.chai1.run_folding_on_context, which allows users to construct an AllAtomFeatureContext manually. This allows users to specify their own templates, MSAs, embeddings, and constraints. We currently provide an example of how to construct an embeddings context, and will be releasing helper methods to build MSA and templates contexts soon.
⚡ Try it online
We provide a web server so you can test the Chai-1 model right from your browser, without any setup.
💬 Feedback
Found a 🐞? Please report it in GitHub issues.
We welcome community testing and feedback. To share observations about the model's performance, please reach via GitHub discussions, or via email.
🛠️ Development
We use devcontainers in development, which helps us ensure we work in identical environments. We recommend working inside a devcontainer if you want to make a contribution to this repository.
Devcontainers work on local Linux setup, and on remote machines with over an SSH connection.
Status
Since this is an initial release, we expect to make some breaking changes to the API and are not guaranteeing backwards compatibility. We recommend pinning the current version in your requirements, i.e.:
chai_lab==0.0.1
Licence
See LICENSE.md.
To discuss commercial use of our models, reach us via email.